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Annotated Reference Genomes available for use with NextGENe Software

In order to efficiently align large genomes and to locate Indels found in 2nd generation sequencing data NextGENe utilizes a modified BWA methodology. The following annotated pre-indexed reference genomes are complimentary to NextGENe software users. Additional annotated genomes are available upon request.

 

Annotated Genome
Build Number
Aedes aegypti
L1.3
Arabidopsis thaliana
9.1
Arabidopsis thaliana
10.1
B. malayi
ws226
C. elegans
ws170
C. elegans
ws190
C. elegans
ws195
C. elegans
ws226
Chicken
2.1
Clover
3.0
Cow
4.1
Cow (UMD)
3.1
Cucumber
1.0
Dog
2.1
Dog
2.2
Dog
3.1
Drosophila melanogaster
5.22
Field Mustard
197
Grape
12x Ensembl 102
Horse
2.1 (beta)
Human
36.3
Human
37.1 SNP131
Human
37.2 SNP132
Human
37.2 SNP134
Human
37.3 SNP135
Human
37p10 SNP135
Human
G1K
Human
GRCh38
M. hapla
ws226
M. incognita
ws226
Maize
B73agpv1
Mouse
37.1
Mouse
37.2
Mouse
GRCm38
Pig
10.2
Pig
4.1
Rabbit
2.0
Rat
3.4
Rat
5.0
Rice
4.1
Rice
6.1
Sheep
1.0
Tomato
2.3
Ustilago maydis
1.1
Wasp
2.0
Zebra Fish
zv9

To Request annotated reference genome please email info@softgenetics.com indicated reference of interest and from which platform the data has been generated.

 

Pricing & Trial Version:
Request 30-day trial/Price Quote

 

Reference Material:
Download/View NextGENe® Brochure
NextGENe User Manual
Annotated Reference Genomes

 

Track Manager Manual
Use the Reference & Track Manager tool to import and manage preloaded references and data from any public or proprietary variant database.
Download the manual

 

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