SoftGenetics - Software PowerTools for Genetic Analysis






NextGENe AutoRun Automation Pipeline

NextGENe's AutoRun Tool allows users to quickly set up job files to specify sample files, reference files and settings for the analysis of multiple projects. The NextGENe AutoRun Tool includes a Job Editor to allow the creation of job files using point-and-click operation within a single step. NextGENe AutoRun scans the job files to check for the availability of all files needed for processing a job. When files are available, NextGENe AutoRun launches NextGENe software to begin processing the job. Jobs are processed consecutively unattended. If some files are not available, NextGENe AutoRun will periodically re-check for the files at the time interval specified in the NextGENe AutoRun settings. Job files can be easily edited to add additional jobs or edit jobs that have not yet been processed. Also, additional jobs can be added to the queue while NextGENe software is currently processing another set of jobs. NextGENe software will automatically begin the next list of jobs that are queued once the first list is complete.


Figure 1: NextGENe AutoRun tool’s Job File Editor, set to run a template or panel that has predefined preprocessing steps, reference selection and processing and report settings.

The AutoRun Tool comes with so predefined templates for some common chemistries including NEBNext. Customized templates can be saved to minimize the redundancy of setting up routine analyses, reducing the chance of error. Steps like removing of duplicate reads and low quality reads, trimming of adapters, alignment and detection sensitivity, as well as specifying of report formats can all be added into templates for future use.


For more information Review or Download Application notes:
Using NextGENe software's Pipeline Analysis Automation Tool
Automated Customizable Reporting Pipe line 



Creating Projects with the NextGENe Software AutoRun Tool (view on )


Pricing & Trial Version:
Request 30-day trial/Price Quote


Reference Material:
Download/View NextGENe® Brochure
NextGENe User Manual
Annotated Reference Genomes


Trademarks property of their respective owners

SoftGenetics - Software PowerTools for Genetic Analysis


SoftGenetics - Software PowerTools for Genetic Analysis




Review all of our software products










SoftGenetics - Software PowerTools for Genetic Analysis




SoftGenetics Software PowerTools for Genetic Analysis provides current up-to-date information and pricing on all products.
All requests are secure.


SoftGenetics - Software PowerTools for Genetic Analysis




Request trial versions of our software and tap into our knowledge base



Trial Software

All of our software products are available for review and trial periods. Please use link to request a trial version.


Request Trial >>


Online Training

Our software professionals are available to you for online training of any of our products. Please contact an expert now.


Request Training >>



SoftGenetics provides online webinars to assist you in the growing knowledge of our products. Visit our Analysis Corner.


View Webinars >>


SoftGenetics - Software PowerTools for Genetic Analysis




Representatives are always ready to assist you

Name *
Email *

Message *


SoftGenetics - Software PowerTools for Genetic Analysis

100 Oakwood Avenue | Suite 350 | State College, PA 16803 | USA
Phone: 814-237-9340 or 888-791-1270


© 2020 SoftGenetics, LLC. All rights reserved

Trademarks are property of their respective owners

Research use only (RUO)


Web design by Lovett Creations