To review panel statistics
When reviewing the information on the Panel Statistics tab, you can filter the information by the following criteria:
• All panel samples, or selected panel samples.
• Samples that have been added to the panel within the last 30 days of the current day’s date, or a custom date range.
• Selected runs for the panel.
When the Panel Statistics tab first opens, the Coverage Regions sub-tab is the open tab. You can select a different panel from the Panel dropdown list to view statistics for a different panel. You can also select a different panel to change the panel group, but you cannot change the panel group directly.
1. To display data on the Panel Statistics tab, do one of the following:
To display Panel Statistics information from: | Steps |
|---|---|
The Panel Statistic tab from the Panels menu | 1. On the Geneticist Assistant main menu, click Panels > Panel Statistics. The Panel Statistics tab opens. 2. On the Panels dropdown list, select the panel for which the statistics are to be viewed. |
The Samples sub-tab on the Patient tab | In the Samples pane, select a sample or CTRL-click to select multiple samples, and then right-click on any selected sample and on the context menu that opens, click Panel Statistics. |
The Runs tab | 1. Select a run, or CTRL-click to select multiple runs. 2. Right-click any selected run, and on the context menu that opens, click Panel Statistics. |
The Run tab | In the Samples pane, select a sample or CTRL-click to select multiple samples, and then right-click on any selected sample and on the context menu that opens, click Panel Statistics. Note: If you select a small number of samples, such as two to four, then, by default, the panel statistics are calculated based only on the selected samples and before the statistics are calculated, a Very few samples message dialog box opens, warning you of this and asking you if you want to continue. You can click Yes, or you can click Cancel to return to the Run tab and select more samples. |
The Associated Samples pane on the Variant tab | 1. Select a sample, or CTRL-click to select multiple samples. 2. Right-click any selected sample, and on the context menu that opens, click Panel Statistics. Note: If you select multiple samples from multiple runs for different panels, then a Select Panel dialog box opens. You must first select the appropriate panel before the statistics can be calculated. Note: If you select a small number of samples, such as two to four, then, by default, the panel statistics are calculated based only on the selected samples and before the statistics are calculated, a Very few samples message dialog box opens, warning you of this and asking you if you want to continue. You can click Yes, or you can click Cancel to return to the Variant tab and select more samples. |
2. Optionally, edit any or all of the calculation criteria as needed, and then click OK to recalculate the panel statistics and update the display accordingly.
Option | Description |
|---|---|
All panel samples | If you select this option, then all samples that have been added to the panel are displayed. To specify a custom date range, select added between, and then change one or both dates as needed. To change the dates, you can do either of the following: • You can select any part of the date that you want to change, or the entire date, and then manually enter the new value. (The default date range is the last 30 days). • You can select any part of the date that you want to change, and then use the Up/Down arrows to change the date accordingly. |
Selected runs | To select specific runs for the panel, choose Selected runs, and then next to Selected runs, click the Browse button  that to open the Select Runs dialog box. All the runs for the selected panel are displayed in the dialog box. Select a run, or CTRL-click to select multiple runs, and then click OK. |
Selected samples | To select only specific samples for the panel, choose Selected samples, and then next to Selected samples, click the Browse button that to open the Select Samples dialog box. All the samples for the selected panel are displayed in the dialog box. Select a sample, or CTRL-click to select multiple samples, and then click OK. |
3. Optionally, after calculating the panel statistics, continue to any of the following needed to view information on any of the five sub-tabs that are available for the Panel Statistics tab:
• Coverage Regions sub-tab. See Coverage Regions sub-tab (Panel Statistics tab).
• Samples sub-tab. See Samples sub-tab (Panel Statistics tab).
• Variants sub-tab. See Variants sub-tab (Panel Statistics tab).
• Patients sub-tab. See Patients sub-tab (Panel Statistics tab).
• Reports sub-tab. See Reports sub-tab (Panel Statistics tab).