Geneticist Assistant Online Help : Geneticist Assistant Data Review - Sample Tab : Sample Variant Data Sub-Tab : Global variant count and frequency information
Global variant count and frequency information
The following table lists the global variant count and frequency information that is displayed on the Sample Variant Data sub-tab.
 
Column
Description
Samples Per Panel
The total number of samples submitted per panel.
Note: Any of the following values that can also be reported as real or related to the artifact type for the variant are marked with an asterisk. For example, for Times Observed Per Panel, two additional columns are also displayed—Times Observed As Real Per Panel and Times Observed As Artifact Per Panel, where the number of samples for which the Artifact Type is set to None is reported for any Observed as Real value and the number of samples for which the Artifact Type is set to any other value, such as Sequencing, is reported for any Observed as Artifact value.
Times Observed Per Run
The number of times that the variant was detected across all samples in the run.
Times Observed Per Panel*
The number of times that the variant was detected across all samples per panel.
Frequency Observed Per Panel*
The frequency at which the variant was detected across all samples per panel.
Samples Per Panel Group
The number of samples that are included in the panel group that include the panel that is assigned to the selected sample.
Times Observed Per Panel Group*
The number of samples that include the variant and that are assigned to any panel that is included in the same panel group as the panel for the selected sample.
Frequency Observed Per Panel Group*
The frequency at which the variant was detected in all samples that are assigned to any panel that is included in the same panel group as the panel for the selected sample.
Patient Variant Frequency
The frequency of the variant found in the patient sample. If multiple samples for a patient have been loaded, then all samples are considered.
Samples With Passed Regions Per Panel
The number of samples that are assigned to the panel for the selected sample where the panel region in which the variant is located has a status of Passed for the sample.
Times Observed In Passed Regions Per Panel
The number of samples that are assigned to the panel for the selected sample where the variant is reported and the panel region in which the variant is located has a status of Passed for the sample.
Frequency Observed In Passed Regions Per Panel
The frequency at which the variant was detected considering only those samples that are assigned to the same panel as the selected sample and where the panel region in which the variant is located has a status of Passed.
Samples With Passed Regions Per Panel Group
The number of samples that are assigned to any panel that is included in the same panel group as the panel for the selected sample where the panel region in which the variant is located has a status of Passed.
Times Observed In Passed Regions Per Panel Group
The number of samples that are assigned to any panel that is included in the same panel group as the panel for the selected sample where the variant is found and the panel region in which the variant is located has a status of Passed.
Frequency Observed In Passed Regions Per Panel Group
The frequency at which the variant was detected in all samples that are assigned to any panel that is included in the same panel group as the panel for the selected sample where the panel region in which the variant is located has a status of Passed.