Sample group statistical information

Geneticist Assistant Online Help : Geneticist Assistant Data Review - Sample Tab : Sample Variant Data Sub-Tab : Sample group statistical information

The following table lists the sample group statistical information that is displayed on the Sample Variant Data sub-tab.


Column	Description
Number of Samples	Number of samples that.have been submitted for the sample group to which this sample is assigned.
Number of Samples Having the Variant	Number of samples in the group that contained the variant.
Coverage Min	The minimum coverage (number of reads) for the variant in the sample group.
Coverage Max	The maximum coverage (number of reads) for the variant in the sample group.
Coverage Median	The median coverage (number of reads) for the variant in the sample group.
Coverage Mean	The mean coverage (number of reads) for the variant in the sample group.
Coverage Standard Deviation	The variation from the Coverage mean for the variant in the sample group.
Variant Frequency Min	The minimum frequency at which the variant was detected in the sample group. Any value < 1 is allowed, with 1 = 100%, 0.5 = 50%, and so on.
Variant Frequency Max	The maximum frequency at which the variant was detected in the sample group. Any value < 1 is allowed, with 1 = 100%, 0.5 = 50%, and so on.
Variant Frequency Median	The median frequency at which the variant was detected in the sample group. Any value < 1 is allowed, with 1 = 100%, 0.5 = 50%, and so on.
Variant Frequency Mean	The mean frequency at which the variant was detected in the sample group. Any value < 1 is allowed, with 1 = 100%, 0.5 = 50%, and so on.
Variant Frequency Standard Deviation	The variation from the Frequency mean for the variant in the sample group.
Read Balance Min	The minimum value for the balance in forward and reverse oriented reads with the variant in the sample group as reported in the VCF file.
Read Balance Max	The maximum value for the balance in forward and reverse oriented reads with the variant in the sample group as reported in the VCF file.
Read Balance Median	The median value for the balance in forward and reverse oriented reads with the variant in the sample group as reported in the VCF file.
Read Balance Mean	The mean value for the balance in forward and reverse oriented reads with the variant in the sample group as reported in the VCF file.
Read Balance Standard Deviation	The variation from the Read Balance mean for the variant in the sample group.