To specify the global Quality Control settings
The settings on the Quality Control tab are the minimum required coverage values (coverage threshold values) that a panel region must meet, or it is flagged as failed region for a run. The coverage values that you specify here are global settings, which means that, by default, they are automatically applied to all panel regions in all runs.
1. On the Geneticist Assistant main menu, click File > Settings.
The Settings dialog box opens. The General tab is the open tab.
2. Open the Quality Control tab.
3. Specify the value for the Quality Control settings.
• Minimum Coverage – The minimum number of reads that are required for a panel region.
• Average Coverage – The average number of reads that are required for a panel region.
• Percent Covered (%) – The minimum percentage of the panel region that has reads aligned to it.
4. If you are done specifying your settings, then click OK to close the Settings dialog box and return to the Geneticist Assistant main window; otherwise, continue to add and/or edit the information on any of the other tabs as needed.