To specify the Alamut settings
To view variants that were imported in to Geneticist Assistant in Alamut, the following is required:
• HTTP-based access must be enabled in Alamut. To enable this in Alamut, select Tools > Options > Api, select Enable HTTP-based access, and then set the port to 10000.
• Geneticist Assistant must be able to connect to Alamut and Alamut must be installed on the same computer as the Geneticist Assistant client.
• Alamut must be open to jump to the variant position from Geneticist Assistant.
1. Enter the information for the Alamut server. (The default value is http://localhost).
2. Leave the Port value set to 10000.
 | For more information about this value, or to change the value, contact SoftGenetics (tech_support@softgenetics.com). |
3. If you are done specifying your settings, then click OK to close the Settings dialog box and return to the Geneticist Assistant main window; otherwise, continue to add and/or edit the information on any this tab or any of the other tabs as appropriate.