• The Bracket Sequence Settings sub-pane. The bracket sequence settings determine how the STR results are displayed in the STR Results Table pane in the STR Viewer.

• The Color settings sub-panes, which from top to bottom are the following:

• The Sample Viewer Preview sub-pane, which shows what the Pane displays currently look like in the Mito Alignment Viewer based on the colors and other settings that are specified in the Sample Viewer sub-pane.

• The Sample Viewer sub-pane, which shows the currently selected colors and variant visibility for the Pane displays in the Mito Alignment Viewer.

• The Global Viewer sub-pane, which shows the currently selected colors for the Global Viewer pane display in the Mito Alignment Viewer.

• The Report Table Category pane, which shows the currently selected colors for the Variants Table pane in the Mito Alignment Viewer.

• The Comparison Viewer Sample to Sample sub-pane, which shows the currently selected colors that indicate the overlap between two samples for the Sample to Sample pane of the Comparison Viewer.

• The Comparison Viewer Variant sub-pane, which shows the currently selected colors for the different variant classifications (major or minor) and the color that indicates if the variant was a low coverage variant for the Variant pane of the Comparison Viewer.

• The STR Viewer sub-pane, which shows the currently selected colors for the different STR statuses (Flagged, Passed, Filtered, and Called) in the STR Viewer.