Mismatches that are different from the consensus are referred to as wrong mismatches. These wrong mismatches most likely result from sequencing errors. For example, A, C insertions and deletions would represent wrong mismatches when a G > T variant is called at a position. The Wrong Allele score is calculated according to the following:

For elongated data, error-corrected data, or data sets in which condensation was not used, both numbers are based on the adjusted coverage:

For data sets in which consolidation was used, both numbers are based on the normal coverage.