The Condensed Reads pane is the top pane of the dialog box. This pane shows a list of all the condensed reads for the index that is currently selected in the Index table. The first line in the pane is the currently selected index. The remaining lines show all the reads that were clustered in the selected group. The middle pane shows the consensus sequences for the subgroups. Reads that share a common anchor sequence can differ in the shoulder sequences because the index is not unique in the genome. Also, indices might not meet the criteria for any groups of reads to be created. As a result, the Condensed Reads pane can be blank, it can have one condensed read, or it can have multiple condensed reads.