The NextGENe Long PE Assembly Mapping Tool
In the PE Assembly method (see PE assembly method for Roche/454, Illumina, and Ion Torrent data), NextGENe automatically decides which scaffold contigs are to be linked together based on the paired read information. You can use the Long PE Assembly Mapping tool to override these automatic selections and manually select the scaffold contigs that are to be linked together.
 | The FinalContig_ScaffoldContig_Mapping.txt file shows the scaffold linking that NextGENe automatically carried out. You must edit this file prior to using the Long PE Assembler Mapping tool. For assistance with editing this file, contact Technical Support at tech_support@softgenetics.com. |