To specify data analysis information in the Project Wizard
1. On the Application Type page, in the Instrument Type pane, select the instrument type that was used to produce that data.
2. In the Application Type pane, select the method by which the data is to be analyzed. (SNP/Indel discovery is selected by default.)
The Application Type that you select determines the sequencing steps that are available for analyzing the data.
\
Application Type | Available Sequencing Steps |
|---|---|
de novo Assembly | Condensation, Assembly |
SNP/Indel Discovery | Condensation, Alignment |
Transcriptome (including Alternative Splicing) | Alignment |
ChIP-Seq | Condensation, Alignment |
STR analysis | Condensation, Alignment |
CNV-Seq | Condensation, Alignment |
HLA | Alignment |
Other | Condensation, Assembly, Alignment |
Mitochondrial amplicon | Condensation, Alignment |
3. In the Performance Settings pane, enter the number of cores that are to be used for processing in the Project Wizard.
 | The default value is one less than the total number of available cores, which allows you to review other projects and/or carry out any other needed project activities while the current project is being processed. |