To export the project output to a BAM file

NextGENe Online Help : Project Setup : Setting up a New NextGENe Project : To specify the post-processing options for a Sequence Alignment project : To export the project output to a BAM file

If you export NextGENe sequence alignment project files to a BAM format, then the standard index file, index.bai, that other alignment viewers require is also exported.

If you do not select this post-processing option, you always have the option of exporting the project output to a BAM format from the File menu on the NextGENe viewer. See NextGENe Viewer main menu.

1. Select Export BAM.

2. If you are done with specifying the needed post-processing options, then Click Finish, and continue to To finish the project; otherwise, continue specifying any other needed post-processing options. See:

• To select the Mutation Report as a post-processing option.

• To select a report other than the Mutation report as a post-processing option.

• To exported aligned sequences as a post-processing option.

• To export a BAM file relative to an ROI BED file.

• To export the project output to Geneticist Assistant.