File | Description |
|---|---|
_assembledsequences.fasta | This file contains all the assembled reads in .fasta format. This file can be used as sample input for alignment projects or as a reference. |
_assembledsequences.cfasta | In addition to the _assembledsequences.fasta file, this file is produced for SOLiD System data. This file contains the assembled reads in color space format. This file can also be used as sample input for alignment projects. |
AssembledContigsWithOrg.fasta | Created only if Save the Original Sequences with Assembled Ones is selected for the General Assembly options. See General Assembly settings. |
shortcontigs.fasta | If you use the Skeleton Assembly method or Maximum Overlap method, then you must specify the minimum contig length that is to be included in the Assembled Sequences output file. Any contigs that contain fewer than this number of bases are saved in this .fasta file. |
_Parameters.txt | This file contains information about the settings that were used for the project. If condensation was carried out as a preliminary step and then assembly was carried out as part of the same project, then a _Parameters.txt file is created that contains the settings for all the project steps. |
_StatInfo.txt | This file provides basic information and various statistics about the assembly process. • Basic information: • The general steps that were used • Process times • Sample file names and output file names • Statistical information: • The assembled sequence count • The average length of the assembled sequences • The username for the user who ran the analysis if User Management is turned on. |
_Uncondensed_Raw.fasta | This file contains all the reads that were not used for assembly. |