To generate a standard report
1. Open the appropriate tab. See:
• The Panel Statistics tab. See Reviewing Panel Statistics.
 | To generate an Action List report, you must first create the Action List to open the Action List tab. See Creating an Action List. |
2. Do one of the following:
Report to be Generated | Action |
|---|---|
Run | On the Geneticist Assistant main menu, click Reports > Run Report. |
Coverage Regions | On the Geneticist Assistant main menu, click Reports > Coverage Regions Report. |
Panel Statistics | On the Geneticist Assistant main menu, click Reports > Panel Statistics Report. |
Sample | On the Geneticist Assistant main menu, click Reports > Sample Report. |
Variant | On the Geneticist Assistant main menu, click Reports > Variant Report. |
Action List | On the Geneticist Assistant main menu, click Reports > Action List report. |
The appropriate report dialog box, for example, the Run Report or Sample dialog box, opens. All the data that can be selected for inclusion in the report is displayed in the Sections and Tables pane of the dialog box. You can right-click any row and then click “Remove Selected Row” to remove the data from the indicated pane or sub-tab from inclusion in the report. | |
3. Optionally, to remove a sub-tab or pane from the report, right-click the row for the sub-tab or pane, and then click “Remove Selected Row” to remove the data from the indicated pane or sub-tab from inclusion in the report.
| | Only the data columns that are shown in the selected sub-tabs or panes at the time that the report is generated are included in the report. Hidden data columns are not included. See To show/hide columns in a tab pane. |
4. Leave the report type set to the default value of ..csv, or select .xml.
5. Optionally, to include active hyperlinks in the saved reports, select Export Hyperlinks.
6. Optionally, for reports that contain variants, such as the Sample report, the Variant report, or the Action List report, select one or both of the following:
• HGVS Coding/Translation: separate row, separate columns: If multiple transcripts are shown for the HGVS Coding or HGVS Protein for a variant, then select this option to create a separate row for each transcript and two separate columns—one for the transcript ID and one for the actual call—within each row.
• Report Supporting Info For Variants: If supporting information has been added for any of the variants for which you are generating the report, then select this option to include this supporting information in a separate Supporting Information section in the report.
7. Do any or all of the following:
Option | Description |
|---|---|
Click Preview | To preview the report in the Preview pane on the Report dialog box before you print it and/or save it. After you click Preview, two new options become available: • Close Preview—Close the Preview and leave a blank Report dialog box open. • Refresh—Refresh the preview in real time. |
Click Save As | To save the report. You must specify the name of the report and the location for the saved report. |
Click Print | To print the report. |
Save to Database | To save the report to the Geneticist Assistant database. When you select this option, a Report Name dialog box opens. Regardless of the options that were selected for the report, the same default name is displayed for the report. For example, if you generate a standard Sample report, then the default report name is always the sample name. Note: If you have previously saved a report with the default name, then you can enter a new name to distinguish the new report from the previously saved report. |
Note: If filters were applied to the data for which you are generating the report, then these filters are explicitly displayed in a separate Filters Applied section in the report. | |
8. Click Close to close the Report dialog box.