To edit the Global Viewer pane colors
You can specify the colors that indicate coverage (forward, reverse, and/or low) and variant type (major or minor) in the Global Viewer pane of the Mito Alignment Viewer, where the default colors are the following:
• Forward coverage: Blue
• Reverse coverage: Red
• Low coverage: Gray
• Major variant: Green
• Minor variant: Burnt orange
1. On the Application Settings dialog box, ensure that the Global Viewer sub-pane is visible.
2. Double-click the color swatch that is displayed for a coverage type or variant type to open the Select Color dialog box, select a different color, and then click OK.
The Select Color dialog box closes and the Application Settings dialog box remains open. The newly selected color is displayed for the selected nucleotide or variant type.
3. Do one of the following:
• If you are done specifying your settings, then click Save to close the Application Settings dialog box and return to the GeneMarkerHTS main window.
• Continue to edit other application settings as needed.