Mito Alignment Viewer Filter Settings
Filter settings define the parameters for including a read in or excluding a read from an mtDNA analysis. When you open a sample in the Mito Alignment viewer, the filter settings that were in place at the time that the project was saved determine the results that are displayed in the Global Viewer and the Pane displays for the Mito Alignment viewer, but you can edit these settings to better suit your working requirements. You specify the variant call filter settings on the Mito Variant tab on the Filter Settings dialog box and you specify the reference region filter settings on the Mito Alignment tab. Four options are available for specifying the filter settings for an mtDNA project.
• You can apply the default filter settings as-is.
• You can edit the default values for the filter settings, and then apply the settings.
• You can load previously saved filter settings, and then apply the settings as-is.
• You can load previously saved filter settings, edit any of the values, and then apply the settings.
See:
 | Table settings define the information that is shown and the information that is hidden for a called variant in the Variants table in the Mito Alignment viewer. See Mito Alignment Table Settings. |