GeneMarkerHTS Online Help : GeneMarkerHTS Viewers and Reports
GeneMarkerHTS Viewers and Reports
Three viewers are available in GeneMarkerHTS application for viewing the results of a project: the Mito Alignment viewer, the STR Analysis viewer, and the Comparison viewer.
The Mito Alignment viewer is a viewing and editing tool that you use to view and edit the results of your mtDNA alignment projects and produce a variety of interactive reports that summarize the alignment and other analysis information.
The STR Analysis viewer is a viewing and editing tool that you use to view the results of a simultaneous analysis of autosomal- and Y-STRs along with mtDNA data for your project samples.
The Comparison viewer is an interactive viewing tool that you use to view a sample to sample comparison for an mtDNA project as well as a variant comparison of all the samples in the project at the same time.
What are you interested in? 
 
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Remember, you can select project samples for viewing during project processing, or after project processing has completed. See Working with a GeneMarkerHTS Project.