Histogram Settings dialog box
Options for adjusting the default display of the histograms in the Histogram Viewer pane are also available in the Histogram Settings dialog box. To open the dialog box, click View > Histogram Settings.
 
Setting
Description
Show All Alleles
Not selected: The default value. The filtered out counts for positions with data are stacked on top of the non-filtered allele counts. The filtered counts for positions without data are displayed as standalone histogram bars.
Selected: The filtered counts for allele positions without data are combined into a single histogram bar labeled “Fit” that reflects the total number of filtered out counts. The histogram bar is displayed to the right of the Unknown (U) allele filtered counts on the far left side of the X-axis.
 
Stack sequence bars vertically
Not selected: The default value.The iso-allele count is stacked on top of the allele count.
Selected. The iso-allele count is displayed side by side with the allele count at the same location on the X-axis.
 
Show Interpretive Threshold
Selected by default. The Interpretive Threshold (IT) is displayed as a single horizontal black line that spans the X-axis of each histogram.
Note: To change the default color of the line, double-click the Black swatch to open the Select Color dialog box, and then select or specify a different color.
 
Show Analytical Threshold
Selected by default. The Analytical Threshold (AT) is displayed as a single horizontal red line that spans the X-axis of each histogram.
Note: To change the default color of the line, double-click the Red swatch to open the Select Color dialog box, and then select or specify a different color.