To finish adding and running the model
1. Optionally, to edit the NCV cutoffs for making aneuploidy calls, double-click a value to select it, and then edit it as appropriate.
 | If you lower a cutoff value, then sensitivity is increased but at the expense of specificity, while conversely, raising a value increases specificity but at the expense of sensitivity. |
2. On the Reference dropdown list, select the SAD_Build_37 folder.
3. Click Run or Run > Run Model. (The options are identical.)
A Processing Model message opens. The message shows the progress of processing the model, which consists of the tool automatically aligning all the loaded control samples, and if applicable, all the loaded the test samples, counting all the reads for each sample, carrying out GC correction that is LOESS-based correction using 50 kb bins, and then calculating the ratios and NCVs for the targeted chromosomes.
After processing is complete, the processing message closes and the Models page opens. An entry for the newly created and trained, and if applicable, tested model is displayed on the page.
4. Double-click the model entry on the Models page to open the Model page and view the model results. See Viewing and Working with Model Results.