Mito Alignment Viewer Overview and Layout
You use the Mito Alignment viewer to view the results of your mtDNA alignment projects. You can edit the display settings for the viewer and you can use viewer options to edit the results of the alignment project. You can load one or more sample files in their own Mito Alignment viewer windows while a project is being run, or you can load one or more sample files for a saved project. (See
Working with a GeneMarkerHTS Project.) When you open a sample file for any project in the Mito Alignment viewer, the filter settings and table settings that were in place at the time that the project was saved determine the variants that were called and the information that is displayed in the Variants Table in the viewer, but you can always edit these settings as needed to better suit your working needs. See
Mito Alignment Viewer Filter Settings and
Mito Alignment Table Settings.• If you load multiple sample files from different projects, then each project sample opens in its own separate Mito Alignment viewer window, and the viewer windows are not linked. You can independently navigate and edit the display settings for each sample file in its own viewer window.
• If you load multiple sample files from the same project, then each project sample opens in its own separate Mito Alignment viewer window, but the viewer windows are linked. All the viewer windows zoom and scroll horizontally across the reference in unison. Any changes that you make to the filter settings for one viewer window are applied to all opened viewer windows for the project’s sample files.
From top to bottom, the Mito Alignment viewer has six major components: