Expression Comparison Report

You use the Expression Comparison report to carry out parallel comparisons of expression levels in multiple projects that were aligned independently to the same reference sequence. The report details the variations in the depth of coverage per region between projects. See The Expression Comparison Report.

Variant Comparison Tool

You use the Variant Comparison tool to compare the variant calls in two or more aligned projects that use the same reference sequence. See The Expression Comparison Report.

Somatic Mutation Comparison Tool

You use the Somatic Mutation Comparison tool to generate a filtered variant report for somatic variant detection. See The Somatic Mutation Comparison tool.

CNV (Copy Number Variation) tool (Dispersion and HMM)

You use the CNV tool to carry out parallel comparisons of the copy number variations in projects that were aligned independently to the same reference sequence. See The CNV (Copy Number Variation) Tool.

CNV (Copy Number Variation) tool (SNP-Based Normalization with Smoothing)

You use the CNV tool to carry out parallel comparisons of the copy number variations in projects that were aligned independently to the same reference sequence. See The CNV (Copy Number Variation) Tool.

Batch CNV Tool

You use the Batch CNV Tool to load multiple sequence alignment projects that have been aligned to the same reference and compare the projects to each other for coverage levels in the ROIs. See The Batch CNV Tool.