If you open a project file for a mitochondrial amplicon analysis project in the NextGENe viewer, then a Mitochondrial amplicon report, which is an application-specific report, is available. The report has visualization options that are specific for mitochondrial amplicon analysis. A Reads Summary Alignment view, which is a view that details all the read information for all the alleles that were identified for a selected amplicon across all amplicons in the project, is also available.