Reads Summary Alignment view
On the report toolbar, click the Reads Summary Alignment icon 
to open the Reads Summary Alignment report, which shows the differences in the alignment of the consensus sequences for all called alleles to the reference sequence for the selected amplicon. An insertion is displayed in green, a deletion is displayed in red, and the different nucleotide is displayed for SNPs.
to open the Reads Summary Alignment report, which shows the differences in the alignment of the consensus sequences for all called alleles to the reference sequence for the selected amplicon. An insertion is displayed in green, a deletion is displayed in red, and the different nucleotide is displayed for SNPs. The view is interactive:
• Change the display - At the top of the view window, click the Next Amplicon and Previous Amplicon icons 
to move through each amplicon.
to move through each amplicon.• Zoom In - Hold down the left mouse button and draw a box from the upper left hand corner of any region in a graph towards the lower right hand corner. A box is formed around the area that is being reduced for viewing.
• Zoom Out - Hold down the left mouse button and draw a box from the lower right hand corner of any region in the graph towards the upper left hand corner. The magnification for zooming out is always 100%.