Pane displays
The Panes display for the Mito Alignment viewer consists of up to four separate panes. Reference Position numbers are displayed at the top of the Panes display. By definition, an mtDNA reference is circular, and this is reflected in the reference position numbers. As you scroll horizontally through a pane display, the position numbers increase up to the end position of the reference, and then the reference position numbering starts over again.
 | For information about horizontally scrolling the display in the Mito Alignment viewer, see Mito Alignment Viewer Navigation and Options. |
From top to bottom, the four panes in the Panes display are the following:
• The Reference pane. See Reference pane.
• The Consensus pane. See Consensus pane.
• The Motifs and Amplicons pane. See Motifs and Amplicons pane.
• The Pile-Up pane. See Pile-Up pane.