• A motif was used for the project. The pane displays the motif regions (green) that were used for the mtDNA alignment project. If you hold your mouse pointer for a motif region, a tooltip opens that displays the following information: the start and end points for the motif region and the variant calls in the region.

• Amplicon settings were specified for the project. The pane displays the amplicon-sequenced regions (blue) that were used for the mtDNA alignment project, whether a panel was used or not. If you hold your mouse pointer over an amplicon region, a tooltip opens that displays the following information: the chromosome, the chromosome start and end positions, and the number of reads that were assigned to the region.