STR Analysis viewer main menu

GeneMarkerHTS Online Help : GeneMarkerHTS Viewers and Reports : STR Analysis Viewer Overview and Layout : STR Analysis viewer main menu

The STR Analysis viewer main menu is displayed below the title bar. The menu is set up in a standard Windows menu format with menu commands grouped into menus across the menu bar. Some of the menu options are available in other areas of the viewer.

Menu Option	Description
File	• Open Mitochondrial Alignment: Opens the Mito Alignment viewer. See Mito Alignment Viewer Overview and Layout.
	• Export Table: Use this option to export the filtered STR results to a .csv file. By default, the file is named <sample file name>_strresults_filtered,csv,and the export location is the project folder, but you can edit one or both of these default values before you export the table.
	• Export Histograms as Images: Use this option to export all the histograms in a single step that are displayed in the Histograms Viewer pane as .jpgs.
	• Export Histograms as SVGs: Use this option to export all the histograms in a single step that are displayed in the Histograms Viewer pane as .svgs.
	• Export Histograms as Single PDF: Use this option to export all the histograms in a single step that are displayed in the Histograms pane to a single PDF file.
Note: By default, the default export location is the project folder, but you can select a different folder.
Edit	Opens the Filter Settings dialog box, which contains options that affect the results that are displayed in the STR Results Table pane. See STR Analysis Viewer STR and STR Stutter Filter Settings.
View	• Stack Pane Display: Stacks the pane display so that both panes are displayed horizontally in the viewer, with the Histogram Viewer pane displayed above the STR Results Table pane.
	• Side-by-Side Pane Display: The default display. Displays the panes side by side in the viewer, with the Histogram Viewer pane displayed on the left and the STR Results Table pane displayed on the right.
	• Zoom In: Zooms in on the Histogram Viewer pane display. You can click this option as many times as needed to achieve a preferred zoom level, you can use the Zoom slider bar, or you can use the standard Windows keyboard command (CTRL ++). Note: When the STR Analysis viewer first opens, the Histogram Viewer pane display is zoomed in at 100%.
	• Zoom Out: Zooms out the Histogram Viewer pane display. You can click this option as many times as needed to achieve a preferred zoom level, you can use the Zoom slider bar, or you can use the standard Windows keyboard command (CTRL + -).
	• Clear Marker Focus. Click to remove the highlighting that is displayed for markers that are in focus in the STR Results Table pane.
	• Histogram Settings: Click to open the Histogram Settings dialog box, which contains options for customizing the display of the histograms in the Histogram Viewer pane. See Histogram Settings dialog box.
Report	Click an option to generate the indicated report based on information in the STR Results Table pane.
Report	• NGS STR Allele Report (.tsv): The format is a tab-delimited file. • NGS STR Allele Report (.fasta): The format is a FASTA report. • CE STR Allele Report. The format is a tab-delimited file. • CE STR Allele Report (GM). The format is a tab-delimited file. See STR Analysis viewer reports.