To select a report other than the Mutation report as a post-processing option

NextGENe Online Help : The NextGENe AutoRun Tool : Batch Processing of Multiple Projects : To create a new job file in the NextGENe AutoRun tool : To select report post-processing options : To select a report other than the Mutation report as a post-processing option

1. On the Report dropdown list, select the report that is to be automatically generated and saved for the project after project analysis is complete.

A blank Settings field opens next to the selected report.

2. Next to the blank Settings field, click Set and then browse to and select a saved Settings file (.ini file) for the report.

3. Repeat Step 1 and Step 2 until you have added all the needed reports and their Settings files.

You must select a Settings file for each post-processing report that you specify.

4. Optionally, click Save Summary report to have a Summary report automatically generated for the project as well.

Remember, Save Summary Report is available only after you select at least one other post-processing report and its Settings file. For information about the Summary report, see Summary Report.

5. If you are done with specifying the needed post-processing options, then return to one of the following as appropriate:

• Step 12 of To create a new job file in the NextGENe AutoRun tool.

• Step 5 of To create a single post-processing Settings file.

• Step 7 of To create a new job from an existing AutoRun template.

• Step 9 of To create a NextGENe AutoRun template.

• Step 5 of To modify a NextGENe AutoRun template.

• Step 6 of To modify a NextGENe AutoRun pre-built template.

Otherwise, continue specifying any other needed post-processing options. See:

• To select the Mutation Report as a post-processing option.

• To export aligned sequences as a post-processing option.

• To export a BAM file relative to an ROI BED file.

• To export the project output to a BAM file.

• To export the output to Geneticist Assistant.