To export aligned sequences as a post-processing option

NextGENe Online Help : The NextGENe AutoRun Tool : Batch Processing of Multiple Projects : To create a new job file in the NextGENe AutoRun tool : To export aligned sequences as a post-processing option

For information about generating and saving an export sequence Settings file, see Export Sequences tool.

1. On the Export dropdown list, select Export Sequence.

A blank Settings field opens next to the Export Sequence option.

2. Next to the blank Settings field, click Set, and then browse to and select a saved Settings file (.ini file) for the sequence that is to be generated.

3. Repeat Step 1 and Step 2 until you have added all the needed sequences and their Settings files.

4. If you are done with specifying the needed post-processing options, then return to one of the following as appropriate:

• Step 12 of To create a new job file in the NextGENe AutoRun tool.

• Step 5 of To create a single post-processing Settings file.

• Step 7 of To create a new job from an existing AutoRun template.

• Step 9 of To create a NextGENe AutoRun template.

• Step 5 of To modify a NextGENe AutoRun template.

• Step 6 of To modify a NextGENe AutoRun pre-built template.

Otherwise, continue specifying any other needed post-processing options. See:

• To select the Mutation Report as a post-processing option.

• To select a report other than the Mutation report as a post-processing option.

• To export a BAM file relative to an ROI BED file.

• To export the project output to a BAM file.

• To export the output to Geneticist Assistant.