To create a single post-processing Settings file
1. Create and save the needed output Settings files. See:
 | Remember, you can create and save up to two different Settings files for the Mutation report—the General Settings file and the Variation Tracks Settings file. |
| | The HLA report is available as a post-processing option only if HLA was selected as the application type for the project. See HLA Analysis Project in the NextGENe Sequence Alignment Tool. |
• See Transcript report.
| | The Transcript report is available as a post-processing option only if Transcriptome with Alternative splicing is selected as the application type. See Transcriptome Alignment Project with Alternative Splicing in the NextGENe Sequence Alignment Tool. |
• See Summary Report.
| | The Summary report is available only after you select at least one other post-processing report and its Settings file. The information that the report contains is relative to the post-processing reports that you select for the project. |
2. Do one of the following to open the Project Wizard.
• Click the Project Wizard icon 
on the application toolbar.
on the application toolbar. • On the NextGENe main menu, click File > Open Project Wizard.
• On the NextGENe main menu, click Process > Project Wizard.
3. Click Post-Processing.
The Post-Processing page opens.
4. Select the appropriate post-processing outputs and, if applicable, the corresponding Settings files (.ini files) by which to post-process the data. See:
5. Click Save Settings, and then name the Settings file and save it to a location of your choice.
This file is the single Settings file (.ini file) that contains all the settings for all the
post-processing outputs that you selected in Step 4.
post-processing outputs that you selected in Step 4.
6. Continue to one of the following;