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Application Notes

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Mutation Surveyor®

DNA Mutation and Methylation Quantification
Heterozygous DNA INDEL
NGRL Technology Assessment
Sequence Assembly
Somatic Mutation Detection Technical Note
UPMC Validation Poster
Genetic Diversity
Hypervariable Mutation Detection
Methylation Detection
Mitochondrial DNA Sequence Analysis using Mutation Surveyor® Software
Variant Knowledge Base with External Annotation
User Management with Audit Trail

NextGENe®

Analysis of Advanta Solid Tumor Assay Samples
Analysis of Advanta RNA Fusions Assay Samples
Condensation
Format Conversion
Illumina SNP & INDEL Detection with NextGENe software
SNP & INDEL Detection of SOLiD™ System Sequence Data with NextGENe
SNP & Indel Detection of 454 Sequence Data with NextGENe
Working with Mutation Scores in NextGENe software
Working with Capture Data
Working with Variant Comparison Too
Structural Variant Detection
Merging Paired End Reads
De novo Assembly
De novo Assembly of SOLiD Sequence Reads
Paired Read Assembly
De Bruijn Assembly
Whole Genome
Transcriptome Analysis
RNA-Seq Analysis with NextGENe Software
ChIP-Seq Analysis
Processing IonTorrent Sequencing Data
Amplicon Sequence Analysis of ION PGM data with NextGENe
16S Bacterial Identification
Serial Analysis of Gene Expression (SAGE)
Small RNA<
Bar-Coding
Deep Sequencing
Target Sequencing Analysis
Alignment of Paired Read
Human Identity Analysis
Using NextGENe software's Pipeline Automation Tool
Demultiplexing Illumina® MiSeq™ Data
IonPGM PE Alignment
Ion AmpliSeq
Ion CFTR Analysis
Analyzing Sequence Data from GS GType Targeted Sequencing of Leukemia-Associated Genes using NextGENe® Software
Finding Causative Mutation Candidates in Rare Disease Studies using NextGENe's Variant Comparison Tool
NextGENe CNV Detection- Dispersion and HMM
NextGENe Batch CNV - MLPA Replacement
HLA Analysis with NextGENe® Software
Working with Circular Reference Sequences in NextGENe® Software
Somatic Mutation Analysis from Whole Exome Sequencing Data with NextGENe® Software
Mutation Detection and CNV Analysis for Illumina Sequencing data from HaloPlex Target Enrichment Panels using NextGENe Software for Clinical Research
NextGENe® Software Analysis of Solid Tumors and Hematological Cancers Using RainDance ThunderBolts™ NGS Panels
NextGENe® Software Analysis Using the NEBNext Direct® Cancer Hotspot Panel
Highly Sensitive Somatic Mutation Detection from Biopsy Samples with Deep Sequencing using NextGENe® Software
Sensitive Aneuploidy Detection (SAD™) Tool
Integrating NextGENe® Software with Pathway Studio for Differential Gene Expression and Biological Pathway Analysis

NextGENe®LR

Structural Variation Detection from Pacific Biosciences Data Using NextGENe®LR Software
Mitochondrial Mixture Analysis with PacificBiosciences Data Using NextGENe®LR Software
STR Expansion Analysis of Pacific Biosciences Data Using NextGENe®LR Software

GeneMarker®

GeneMarker®HID

Cell Line Authentication
MixtureAnalysis with GeneMarkerHID
Crime Scene Suspect
Paternity Testing
Missing Persons Identification
Locus Specific Bracket (LSB)
Automated Contamination Check Tool in GeneMarker®HID Software

GeneticistAssistant®

Tracking Copy Number Variant Data with Geneticist Assistant® NGS Workbench
Utilizing External Databases in Geneticist Assistant® NGS Workbench

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