NextGENe® Next Generation Sequencing Software

NextGENe software is the perfect analytical partner for the analysis of desktop sequencing data produced by Illumina® iSeq, Miniseq, MiSeq, NextSeq, HiSeq, and NovaSeq systems, Ion Torrent Ion GeneStudio S5, PGM, and Proton systems as well as other platforms.

NextGENe software runs on a Windows® Operating System, which provides a biologist-friendly ‘point & click’ interface. It does not require scripting or other bioinformatics support, which are often required when using programs such as CLC Genomics Workbench, Lasergene's SeqMan Pro, as well as academic software such as MAQ & SOAP, Top Hat, BWA & Bowtie.

Download Trial

Download the NextGENe Brochure, or request a free, 35-day trial today, and see how our PowerTools can greatly assist you with your genetic analyses.

NextGENe software employs unique platform-specific technologies in one free-standing multi-application package. NextGENe software contains analysis modules for:

• SNP/Indel detection
  • Germline
  • Somatic
  • Exome Capture, Whole Exome Sequencing (WES)
  • Whole Genome Sequencing (WGS)
• Structural Variant Analysis (including fusion gene detection)
• Family-based and Trio comparisons
• Tumor-normal comparisons
• Copy Number Variation (CNV) detection and alternative to MLPA-like screening
• de novo assembly
• Transcriptome; Alternative Splicing Analysis & Transcript Expression levels
• ChIP-Seq, Digital Gene Expression (DGE), miRNA Analysis & Quantification & Metagenomicss

NextGENe software is designed in a biologist friendly Windows® environment significantly reducing the need for additional bioinformatics resources and costs. NextGENe software utilizes low cost 64-bit Windows OS based hardware. (Click here for suggested hardware configuration)

Read Articles:

• Assessment of clinical analytical sensitivity and specificity of next-generation sequencing for detection of simple and complex mutations.
• Targeted Next-Generation Sequencing can Replace Sanger Sequencing in Clinical Diagnostics.
• Streamlined Ion Torrent PGM-based diagnostics: BRCA1 and BRCA2 genes as a model.
• Evaluation of a new NGS method based on a custom AmpliSeq library and Ion Torrent PGM sequencing for the fast detection of genetic variations in cardiomyopathies.

Reference Material:

• NextGENe User Manual
• Annotated Reference Genomes