SoftGenetics - Software PowerTools for Genetic Analysis



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GeneMarker® software is a unique genotype analysis software which integrates new technologies enhancing the speed, accuracy and ease of analysis. Biologist-friendly, the software is an excellent alternative to Applied BioSystems Genotyper® and GeneScan® or GeneMapper® software; LiCor's SAGA, MegaBACE® Genetic Profiler and Fragment Profiler, SeqencePilot®, or MRC Holland's Coffalyser.Net software. Compatible with outputs from all major sequencing systems i.e. ABI®PRISM, Beckman-Coulter®, and MegaBACE® platforms the software's Windows® based operation (XP,Vista 7 or 8) simplifies such applications as Amplified Fragment Length Analysis (AFLP®), t-RFLP, SSR (short sequence repeat) and Microsatellite Analysis, any genotyping application. GeneMarker software includes integrated modules for MLPA®, MS-MLPA, LOH, SNapShot®, SNPlex®, SNPWave®, TILLING® (Targeted Induced Local Lesions in Genomes), Microsatellite Instability (MSI), Haplotype Analysis, Trisomy, as well as Cystic Fibrosis Analysis utilizing chemistries from GeneProbe®, MRC Holland, Abbott Diagnostics and others, Fragile X and other Repeat Expansion Disorders from Asuragen® and custom chemistries. Incorporated tools include Kinship Analysis of Wild Populations; Phylogeny Clustering; Project Comparison; as well as a User Management providing an analysis audit trail and editing.


User Operation
Panel Selection
Sizing Technologies
User Management
Project Comparison
Replicate Comparison


View live webinars
Introduction to GeneMarker software (View) (view on )
Creating Custom Panels (View) (view on )
MLPA® Analysis (View) (view on )
Aneuploidy/Trisomy Analysis (View) (view on )
Relationship Testing and Cluster Analysis (View) (view on )
Merging two or more multiplexes for greater resolution of dendrogram (View) (view on )
Fragile X Analysis Using GeneMarker software (View) (view on )


Automated Applications, although GeneMarker software can be used for any genotyping application, we have incorporated preset analysis modules for many key genotyping applications. Click here to access GeneMarker software Application Notes


Application Notes

  • Fragile X Application Note (PDF)
  • AneuploidyAnalysis GeneMarker software AppNote (PDF)
  • Capillary Tilling Application Note (PDF)
  • DatabaseSearching KinshipAnalysis App Note (PDF)
  • Genotype Merge Tool App Note (PDF)
  • GM Kinship Analysis Application Note (PDF)
  • Haplotype Analysis App Note (PDF)
  • MS-MLPA Application Note (PDF)
  • MLPA Application note(PDF)
  • New Technology Size Calling App Note (PDF)
  • LOH application note (PDF)
  • Microsatellite and Pedigree Technical Note (PDF)
  • AFLP® Application Note (PDF)
  • Yale AFLP Analysis comparison (PDF)
  • MLPA Luminex Application Note (PDF)
  • MSI Application Note (PDF)
  • SBE-SNaPshot™ Application Note (PDF)
  • SNPlex™ Application Note (PDF)
  • SNPWave® Application Note (PDF)
  • T-RFLP Application Note (PDF)
  • Trisomy Application Note (PDF)
  • Clustering Algorithms Application Note (PDF)
  • Analysis of MegaBACE™ Data with GeneMarker® Software Application Note (PDF)

Download/View GeneMarker® Brochure

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SoftGenetics - Software PowerTools for Genetic Analysis

SoftGenetics - Software PowerTools for Genetic Analysis


















SoftGenetics - Software PowerTools for Genetic Analysis





SoftGenetics - Software PowerTools for Genetic Analysis

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100 Oakwood Avenue
Suite 350
State College, PA 16803

Phone: 814-237-9340 or 888-791-1270


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